FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences885059
Total Bases155.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG12270.13863482547491185No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA10550.11920109280850204No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT8880.10033229423123205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)