FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152092
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC5660.3721431764984352No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC5340.35110327959393No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA2650.17423664624043342No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA2420.15911422034032033No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2410.15845672356205454No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2400.15779922678378877No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA2220.14596428477500462No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1950.12821187176182836No Hit
CAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTA1870.12295189753570208No Hit
GTACATGGGCGTCATATCGAAAGATATG1800.11834942008784156No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1670.10980196197038636No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA1590.10454198774426005No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG1550.1019120006311969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)