FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39403
Total Bases5.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1710.4339771083420044No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1110.28170443874831863No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1040.26393929396238863No Hit
GTACATGGGCGTCATATCGAAAGATATG880.2233332487374058No Hit
GGTATCAACGCAGAGTACATGGGGG670.17003781437961576No Hit
GTATCAACGCAGAGTACATGGGGGG580.1471969139405629No Hit
GTATCAACGCAGAGTACATGGGGAG540.1370454026343172No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA500.12689389132807147No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA480.1218181356749486No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG480.1218181356749486No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC470.1192802578483872No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC460.11674238002182574No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG460.11674238002182574No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG460.11674238002182574No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG440.1116666243687029No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT440.1116666243687029No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC430.10912874654214146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)