FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69206
Total Bases10.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGCGTCATATCGAAAGATATG2490.35979539346299455No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2470.35690547062393435No Hit
GAGTACATGGGCGTCATATCGAAAGATATGACG950.13727133485535936No Hit
GTATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG880.12715660491864866No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC800.11559691356240788No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG750.1083721064647574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)