FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144830
Total Bases25.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC2490.1719257060001381No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG1940.1339501484499068No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1730.11945039011254574No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1690.11668853138161984No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1630.11254574328523097No Hit
GTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGT1500.10356970240972174No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA1450.10011737899606435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)