FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812842
Total Bases141.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG13290.1635004096737127No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC10070.12388631492959272No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC8590.10567859436397234No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA8560.10530951894710165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)