FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540158
Total Bases94.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG7520.1392185249501072No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA7270.134590249519585No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG6770.12533369865854066No Hit
CTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAAT5800.10737598998811458No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT5730.10608007286756838No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC5480.1014517974370462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)