FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381601
Total Bases66.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA4840.12683404917702No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG4470.11713805781431391No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT3900.10220099003933428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)