FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382785
Total Bases67.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA4540.11860443852293062No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4000.104497302663375No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT3940.10292984312342437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)