FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences869322
Total Bases152 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA14270.164150913010369No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG13910.16000975472839754No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT12620.14517060421799977No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC12420.14286996072801564No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG10490.12066875104966858No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG9230.10617469706276844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)