FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1259372
Total Bases221.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA13660.10846675962305022No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG13270.10536997805255317No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT13230.1050523594299381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)