FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59804
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2460.4113437228279045No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2270.37957327269078994No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1980.33108153300782556No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1240.2073439903685372No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1220.20399973245936726No Hit
GTACATGGGCGTCATATCGAAAGATATG1170.19563908768644236No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1170.19563908768644236No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1090.18226205604976256No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG1050.17557354023142263No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1030.17222928232225268No Hit
GTATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG980.16386863754932782No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA950.15885225068557288No Hit
GAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCC910.15216373486723297No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG910.15216373486723297No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA900.15049160591264799No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC830.13878670323055314No Hit
CAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTA820.13711457427596818No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC820.13711457427596818No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA790.1320981874122132No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT790.1320981874122132No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA760.1270818005484583No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAA750.1254096715938733No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC720.12039328473011839No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCA650.10868838204802354No Hit
ATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCC630.10534412413885359No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG630.10534412413885359No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG620.1036719951842686No Hit
CCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTA600.10032773727509867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)