FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53783
Total Bases6.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGCGTCATATCGAAAGATATGACG3500.6507632523288027No Hit
GAGTACATGGGCGTCATATCGAAAGATATGACG3250.6042801628767455No Hit
GTACATGGGCGTCATATCGAAAGATATG2350.436941040849339No Hit
GAGTACATGGGCGTCATATCGAAAGATATG2150.3997545692876931No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1480.27517988955617945No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1380.2565866537753565No Hit
GGTATCAACGCAGAGTACATGGGGG1270.2361340944164513No Hit
GTATCAACGCAGAGTACATGGGGGG1220.2268374765260398No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA950.1766357399178179No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC920.17105776918357102No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG920.17105776918357102No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG900.16733912202740645No Hit
GTATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG850.15804250413699497No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG830.15432385698083037No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA710.13201197404384285No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA670.12457467973151368No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC620.1152780618411022No Hit
GTATCAACGCAGAGTACATGGGGAG620.1152780618411022No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA610.1134187382630199No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC590.10970009110685532No Hit
TATCAACGCAGAGTACATGGGGGGG580.10784076752877303No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTG580.10784076752877303No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGG570.10598144395069073No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC570.10598144395069073No Hit
GTATCAACGCAGAGTACATGGGGGGG560.10412212037260846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)