FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543403
Total Bases96.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA9240.17003954707647914No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT8870.163230604174066No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG7740.14243572449912864No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG6950.1278977112750574No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC6400.11777630966336218No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG6190.11391177450253312No Hit
GCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCG5700.10489452579393194No Hit
CTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAAT5550.1021341435361969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)