FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141482
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG2790.19719823016355437No Hit
TATCAACGCAGAGTACATGGGGGGG2360.16680567139282734No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA2340.16539206400814238No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2300.16256484923877243No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1960.1385335236991278No Hit
GTACATGGGCGTCATATCGAAAGATATG1900.13429270154507286No Hit
GTATCAACGCAGAGTACATGGGGGG1890.13358589785273037No Hit
GTATCAACGCAGAGTACATGGGGGGG1790.12651786092930548No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1740.12298384246759306No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1690.11944982400588061No Hit
GGTATCAACGCAGAGTACATGGGGG1620.11450219815948319No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1620.11450219815948319No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC1610.1137953944671407No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG1590.11238178708245572No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC1490.10531375015903083No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAA1430.10107292800497589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)