FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1296339
Total Bases227.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG30730.2370521908235423No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC16230.12519873273889007No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA15060.11617331577619744No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG13420.10352230396524366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)