FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46962
Total Bases6.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGCGTCATATCGAAAGATATGACG1150.24487883820961628No Hit
GAGTACATGGGCGTCATATCGAAAGATATG910.19377368936587028No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC840.17886802095311102No Hit
GTACATGGGCGTCATATCGAAAGATATG830.17673863975128828No Hit
GAGTACATGGGCGTCATATCGAAAGATATGACG800.17035049614582No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG690.14692730292576978No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC690.14692730292576978No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC540.11498658489842851No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA540.11498658489842851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)