FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53375
Total Bases8.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1440.26978922716627635No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1390.2604215456674473No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1030.19297423887587822No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA790.14800936768149883No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC620.11615925058548009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)