FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158973
Total Bases28.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG2830.17801765079604712No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2220.13964635504142212No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2210.1390173174061004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)