FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences614792
Total Bases108.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA7350.11955262918190218No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC6870.11174511054145142No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG6240.10149774232585981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)