FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1633
Total Bases250.8 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGGG30.1837109614206981No Hit
GTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTT30.1837109614206981No Hit
CGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCAC30.1837109614206981No Hit
CTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGTTTCAATTGG30.1837109614206981No Hit
CCAAGACCACTGGCCGCCGTGGCCGCACCGTGGGTGTGTCCAAGAAGAAA20.1224739742804654No Hit
GTTCCAGCAGGGCAAGCTTCTTGCGTGCATCGCTTCAAGGCCGGGACAGT20.1224739742804654No Hit
GCCAACATTTGTGTAATCATTACCCAGGCCATGAAATAAAATATAGCCAG20.1224739742804654No Hit
GTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGT20.1224739742804654No Hit
ATAGAAAAATACAGCAAACTTTTAATAACAGTCTCTCTACATGACTTAAG20.1224739742804654No Hit
CTTATATACAAGCTTTGATTAAAACTTGAAAC20.1224739742804654No Hit
GTGTGGTGGGAACCAAGAAGCGGGTGCTCACCCTCCGCAAGTCCTTGCTG20.1224739742804654No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG20.1224739742804654No Hit
CTCTAGTCCTACCCAGTTTTAAAGTTCATGGTAAGATTTGACCTCATCTC20.1224739742804654No Hit
CCGTGGGTGTGTCCAAGAAGAAATAAGTCTGTAGGCCTTGTCTGTTAATA20.1224739742804654No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT20.1224739742804654No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA20.1224739742804654No Hit
CGCCAGTGTCATCCTTTTTGGAACCAACAATAGCAGCTCCATTTCTGGAG20.1224739742804654No Hit
GCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTT20.1224739742804654No Hit
TGGAAAAGGAATAGGAAGGAGAAATTAATTGAGATTTTCAGGACACAGAC20.1224739742804654No Hit
GTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTT20.1224739742804654No Hit
CACCAAGACCACTGGCCGCCGTGGCCGCACCGTGGGTGTGTCCAAGAAGA20.1224739742804654No Hit
CTCTAAGGGAGATCAGTCTATTCTTTGTCTCTTTCCTCATTTATTAATGT20.1224739742804654No Hit
ACACACTTGTGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAA20.1224739742804654No Hit
TCCATGGAGTGGGCTTCAAGAAGCGTGCACCTCGGGCACTCAAAGAGATT20.1224739742804654No Hit
GGCTTGATCCCAGGGGGTGGGGGTGGAGGCTGCAGTGAGCTGAGATCATG20.1224739742804654No Hit
GGATTATCCGGGGCATCTACTCAATGAAAAACCATGATAATTCTTTGTAT20.1224739742804654No Hit
GCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACC20.1224739742804654No Hit
GGTCTCTTTTGTTTGATGGTTGCTTTCTTGATTTTGTTTGCCATGTAACA20.1224739742804654No Hit
GACAAAGACCCAGTGAACAAATCCGGGGGCAAGGCCAAAAAGAAGAAGTG20.1224739742804654No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC20.1224739742804654No Hit
ATTATAAATAAACCTGTTAAATTTTTCTGGACAATGCCAGCATTTGGATT20.1224739742804654No Hit
CCTGTATGTAGGATGTAATTTCCATTAAAATGGCTTTTAAAATGTC20.1224739742804654No Hit
GCCGGGCCCCATTCCAGGCTGGGTCGGGTCTTTAGAATAAGGACCAGTTG20.1224739742804654No Hit
CTGTTGGCTCATTAATTGTAACAAATGAACCATAATGATGCAAGATGTTA20.1224739742804654No Hit
CTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAGCCAGAGAGGCAAAGG20.1224739742804654No Hit
TGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGA20.1224739742804654No Hit
TAATAGGTGTTAAAAAAAAAAATAAAGGACCTCTGGGCT20.1224739742804654No Hit
CTCTAAGGCCTACCACCTTCAGAAGTCGACCTGTGGCAAATGTGGCTACC20.1224739742804654No Hit
GGTGTGGGCCGAAGATATGCTCATGTGGTGTTGAGGAAAGCAGACATTGA20.1224739742804654No Hit
GTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGG20.1224739742804654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)