FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences607859
Total Bases107.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA8820.14509943917915175No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT8350.13736738289636247No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC6800.1118680483467383No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG6640.10923585897387389No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG6540.1075907406158336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)