FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008168851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008168851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58672
Total Bases9.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC5540.944232342514317No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC5010.8538996454867739No Hit
GTTATAAGACTGACTAGCCCGATGGGCCTCCCAACGGGCCCTCCTCCCCT2890.4925688573766021No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2790.4755249522770657No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2650.4516634851377148No Hit
GTACATGGGCGTCATATCGAAAGATATG1960.33406053995091356No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1670.284633215162258No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA1550.2641805290428143No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA1460.24884101445323153No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC1460.24884101445323153No Hit
GTATCAACGCAGAGTACATGGGGAGTGGGCGGC1460.24884101445323153No Hit
TATCAACGCAGAGTACATGGGGAGTGGGCGGC1440.24543223343332427No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA1390.23691028088355603No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG1330.22668393782383417No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT1270.21645759476411236No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG1270.21645759476411236No Hit
GTATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG1190.20282247068448322No Hit
TTATAAGACTGACTAGCCCGATGGGCCTCCCAACGGGCCCTCCTCCCCTC1140.19430051813471502No Hit
CTACTACTCCTTGTCATATTTCTTCCTGAATTGCTGATTCTTATTGGATT1130.1925961276247614No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG1120.19089173711480775No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG1030.17555222252522498No Hit
ACGCAGAGTACATGGGGAGTGGGCGGC1020.17384783201527135No Hit
CACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGC980.16703026997545678No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT980.16703026997545678No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT950.16191709844559585No Hit
GGGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTT950.16191709844559585No Hit
GGTATCAACGCAGAGTACATGGGGG900.15339514589582764No Hit
CTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCT890.151690755385874No Hit
GTATCAACGCAGAGTACATGGGGGGCGGC800.13635124079629124No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATG790.1346468502863376No Hit
ATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGG760.1295336787564767No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA750.12782928824652304No Hit
TATCAACGCAGAGTACATGGGGGGCGGC730.12442050722661577No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG690.1176029451868012No Hit
GATGAAATACAATGCAATAAAATAATATCCCTGCATCCATTATTTTCTAA680.11589855467684755No Hit
GACTAGCCCGATGGGCCTCCCAACGGGCCCTCCTCCCCTCCTTGCACCGA670.11419416416689392No Hit
GATATATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAATTG670.11419416416689392No Hit
ACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAG670.11419416416689392No Hit
CTGCTAAGACAGCTAAGAAAGCTCCAATTGGTAGAGTTCCAACATCTCCT640.109080992637033No Hit
CTTCATAAGGGGTTGGGTAAGATGAAATACAATGCAATAAAATAATATCC610.10396782110717206No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC600.10226343059721843No Hit
GTATCAACGCAGAGTACATGGGGGG600.10226343059721843No Hit
ACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTAC590.1005590400872648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)