FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156441
Total Bases25.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3450.2205304236101789No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA3100.19815777193958106No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3030.1936832416054615No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA2690.17194980855402356No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2590.16555762236242416No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG2510.16044387340914465No Hit
CAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTA1700.1086671652571896No Hit
CCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTA1670.1067495093997098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)