FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478663
Total Bases83.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG7190.15021006428322223No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA6100.1274383021039855No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT5650.11803711588319965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)