FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences991677
Total Bases166.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG11720.11818364245616264No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA10840.10930978534341323No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC10180.10265439250885117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)