FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1513438
Total Bases264.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG31900.21077837347813388No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA19430.12838319111849972No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC18130.11979347683882657No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG16500.10902329662662098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)