FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences645474
Total Bases113.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG12760.1976841824767535No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG11270.17460037120007932No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA10460.1620514536604108No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT9080.14067181637060516No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG7680.11898232926500524No Hit
GATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAA7290.11294025785701671No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA6830.10581371209374817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)