FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1469482
Total Bases256.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG28860.19639573672899702No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA18820.12807234113789756No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC17530.11929373752111289No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC16190.11017487795018925No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA15640.1064320624546609No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA14960.10180458147837129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)