FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences932495
Total Bases160.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG43980.4716379176295852No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC19930.2137276875479225No Hit
CCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGA13370.14337878487284114No Hit
GATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTG12510.1341562153148274No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG12220.13104627906852045No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG12180.13061732234489193No Hit
CGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACC12020.12890149545037774No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG11340.12160923114869247No Hit
CCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAA10560.11324457503793586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)