FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008169959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008169959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294836
Total Bases50.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG4980.16890746041867344No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG3660.12413680825950697No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3660.12413680825950697No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3520.1193884057577772No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG3300.11192663039791613No Hit
GTTTTAATTAGATGCTCGCTAAGTATTTTATACCGTTTCTAGGAAGGGTG3090.10480402664532146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)