FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences814740
Total Bases138.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG10590.12998011635613815No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA9580.11758352357807399No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT9430.11574244544271793No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG8780.10776444018950831No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC8690.10665979330829467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)