FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1145098
Total Bases193.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC12710.11099486681489269No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG12700.1109075380447787No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG11890.10383390766554479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)