FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences679032
Total Bases115.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG13550.1995487694247105No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA10730.15801906243004749No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT9980.1469739275910414No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG8390.1235582417323484No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA7920.11663662389990456No Hit
GCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCG7220.10632783138349886No Hit
GATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAA6880.10132070358981608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)