FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529643
Total Bases89.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC5980.11290624061868089No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG5650.10667562867818511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)