FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1220190
Total Bases217.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG21690.17775920143584195No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA19780.1621059015399241No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT18930.1551397733139921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)