FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75301
Total Bases11.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1580.20982457072283237No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1490.19787253821330394No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1280.16998446235773762No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1040.1381123756656618No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG900.11952032509528426No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA900.11952032509528426No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC850.11288030703443513No Hit
GTACATGGGCGTCATATCGAAAGATATG810.10756829258575583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)