FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008170690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008170690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83985
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1370.16312436744656783No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1130.1345478359230815No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA1130.1345478359230815No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC980.11668750372090256No Hit
GTACATGGGCGTCATATCGAAAGATATGACG930.11073405965350955No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC930.11073405965350955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)