FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008171052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008171052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59395
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3840.646519067261554No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3590.6044279821533799No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1650.27780116171394903No Hit
GTACATGGGCGTCATATCGAAAGATATGACG1570.2643320144793333No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1510.25423015405337146No Hit
GTACATGGGCGTCATATCGAAAGATATG1320.2222409293711592No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA1070.1801498442629851No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC990.1666806970283694No Hit
CTACTACTCCTTGTCATATTTCTTCCTGAATTGCTGATTCTTATTGGATT950.15994612341106154No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA920.15489519319808065No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG900.15152790638942673No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT890.14984426298509976No Hit
TAGTAGCCTAGAGCGCCAGGGGCGGAAATTCGCCTGAAAAGTTTTGCCGG780.13132418553750316No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT770.1296405421331762No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT760.12795689872884924No Hit
CACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGC720.12122232511154138No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA720.12122232511154138No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT720.12122232511154138No Hit
GGGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTT690.11617139489856049No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG680.11448775149423351No Hit
GATATATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAATTG660.1111204646855796No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA660.1111204646855796No Hit
ACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG630.1060695344725987No Hit
TATCAACGCAGAGTACATGGGCGTCATATCGAAAGATATGACG600.10101860425961781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)