FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008171178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008171178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1068895
Total Bases186.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG21010.19655812778617168No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC11860.11095570659419307No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG11270.10543598763208735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)