FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008171253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008171253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140744
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4410.3133348490877053No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC4040.28704598419826066No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2450.17407491615983628No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2400.17052236685045188No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2010.14281248223725346No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1980.1406809526516228No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1910.13570738361848464No Hit
GTACATGGGCGTCATATCGAAAGATATG1750.12433922582845451No Hit
CAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTA1750.12433922582845451No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1690.1200761666571932No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA1690.1200761666571932No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA1660.11794463707156255No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1660.11794463707156255No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1590.11297106803842437No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG1470.10444494969590178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)