FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008171269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008171269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2366
Total Bases405.6 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC80.33812341504649196No Hit
AATACAGCCAGGTCCTAGCCAATGGTCTGGACAACAAGCTCCGTGAAGAC70.2958579881656805No Hit
GGTGGCGCACGCCTGTAATCATAGCTACTTGAGAGGCTGAGGCACGAGAA70.2958579881656805No Hit
TATTTGGGCAAGAGATGCGCTTATGTATATAAAGCAAAGAACAACACAGT60.25359256128486896No Hit
AATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCAC60.25359256128486896No Hit
GTTTTATAATACAACCATCTGTAATGTATCTCTCGTTTGAGCTTGTGGGC50.2113271344040575No Hit
ACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCATGGAA50.2113271344040575No Hit
GTCCTACTCTTCCACACTAGGAAGGCTTTACTTTTTTTAACTGGTGCAGT50.2113271344040575No Hit
GCACTATTCAGTGCTGGGTGTGGCGGCTCACATCTGTAATCTCAGTATTT50.2113271344040575No Hit
ACATATTGCCTGTTGGGGTCATGAGCTATGTAGGGAATGAAAAAATTTTT50.2113271344040575No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA50.2113271344040575No Hit
CCATGATGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTG50.2113271344040575No Hit
CCTTTATAAGAGGAGGTAAAGATGGAGAAGACGGCTGATAAAAGACCATG50.2113271344040575No Hit
TCATATGGCTGTAGCATTCGTGCTATCCCTGGGGGTTGCAGCTTTGTATA40.16906170752324598No Hit
GTCATACACATGGCGGAAACTGGATCCTGGCAGCGAGGAGACCCAGACGC40.16906170752324598No Hit
CGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGGGAA40.16906170752324598No Hit
CCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGACA40.16906170752324598No Hit
GCGTAGTGGCGGGCGCCTGCAATCCCAGCTACTCGGGAGGCTGATGCAGG40.16906170752324598No Hit
GGGGTAATGAACACATTCTGGAATTAGAGCTGGTGGTTGAACAACATTGT40.16906170752324598No Hit
TCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAG40.16906170752324598No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG40.16906170752324598No Hit
CTACTACTATCCACATTAGAAAGATGAAGATAGATTAAACAACCAACCCT40.16906170752324598No Hit
CTTCCATACCACTGCCAGACGATGAGGAAGATGACATAGCAGCAGCAGTG40.16906170752324598No Hit
GTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCC40.16906170752324598No Hit
CACTGTGACCCCTGTTCCCATGCTGACCTGTGTTTCCTCCCCAGTCATCT40.16906170752324598No Hit
ATTCAGTGCTGGGTGTGGCGGCTCACATCTGTAATCTCAGTATTTTGGGA40.16906170752324598No Hit
AAGTGGTATAATACTTAATTTTGGCATTTGACTCTTAAGATTATGTAACC40.16906170752324598No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT40.16906170752324598No Hit
GAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACATGAGATGGCACACA40.16906170752324598No Hit
GGGCAGTTCTGTTTCTACCACAAAGATAAGAAGTTGTCTGATCAAAGCAA40.16906170752324598No Hit
CCCCAGGACTGGGCCACTTCTGGGTGGGGCAGTGGGTCCCAGATTGGCTC40.16906170752324598No Hit
GGCTAATACAGTGAAACCCCGTCTCTACTAAACATACAAAAAATTAGCCA40.16906170752324598No Hit
TATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACT40.16906170752324598No Hit
GATTTGGTGCTGGCAGGTGTTCTGATATGATTTTTAGGAATCAAGTCTTC40.16906170752324598No Hit
GCCTCAGCCTCCCCAGCAGCTGGGATTATAGGCATGTGCCACTATGCCCA40.16906170752324598No Hit
GAACTGCTGATCTGAGTCAGGGGTAAGGAAAGAGAGGAGTGGAGCTGAGA40.16906170752324598No Hit
CTTTGGGAGGCCGAGGCAGGCGGATCACTTAGGTCAGGAGTTCGAGACCA40.16906170752324598No Hit
TTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGC40.16906170752324598No Hit
GGTAATGTGATACCTATTTTGATAAAGCATTAAAATAAGTCTTCATAAAG40.16906170752324598No Hit
GAACCGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAACCCGTCTCTC40.16906170752324598No Hit
GTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAAATCACAGCCTTTGTA40.16906170752324598No Hit
GCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAAGTTGGTGATGA40.16906170752324598No Hit
TGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGAACTCT40.16906170752324598No Hit
GCACTGTCCTGCTCTCCGGTCCTCGCAAGGGCCGAGAGGTGTACCGGCAT40.16906170752324598No Hit
TGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAA40.16906170752324598No Hit
CTAATGAACCATGGCTGTCATCAGGAAAATGGTTGGGAGATTTCTCAATC40.16906170752324598No Hit
AAGTGAGATGGCTGAGGTTTTCAGCAGTAAGAGACTCCCCAGGTGTGCCT40.16906170752324598No Hit
GTCCTAGCTACTGGGGAGGTTGAGGCAGGAGGATCATTTGGGTCAGGGAG40.16906170752324598No Hit
ATCAAAAGCACTATTCAGTGCTGGGTGTGGCGGCTCACATCTGTAATCTC40.16906170752324598No Hit
GGTAGATAAAGAGGATGAAATTACTGAAAAGAAAGCCAAAAAAGCCAAGA40.16906170752324598No Hit
TATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAA40.16906170752324598No Hit
CAATAACTTAGTCTTGTTTGACAAAGCTACCTATGATAAACTCTGTAAGG40.16906170752324598No Hit
GTGCTAGAGGGCAAAGAGTTGGAGTTCTATCTTAGGAAAATCAAGGCCCG40.16906170752324598No Hit
TCTTCAGGGCTTCCTGTTTGAAGTCAAGTCAGAGGTAAACCGGTCAGTTA30.12679628064243448No Hit
GTGTAAAGGGTGGTGGTCACGTGGCCCAGATTTATGCTATCCGTCAGTCC30.12679628064243448No Hit
GCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAA30.12679628064243448No Hit
AGATAACGCTTTGATTGCTCGATCTCTTGGTAAATACGGCATCATCTGCA30.12679628064243448No Hit
GGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACATGGTGAAACC30.12679628064243448No Hit
GAATTGCACATGAGATGGCACACATATTTATGCTGTCTGAAGGTCACGAT30.12679628064243448No Hit
ATAACATTCACCTGGCTGTCAACTTCTTGGTGTCATTGCTCAAGAAAAAC30.12679628064243448No Hit
CCCTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAG30.12679628064243448No Hit
GAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGATGAAGATGCTT30.12679628064243448No Hit
GTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTC30.12679628064243448No Hit
GGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAAGACCTACAGCT30.12679628064243448No Hit
CCCCAGGACAGCTCAGACGCGATCGTGAGCAAGGCCATTGACTTGTGGCA30.12679628064243448No Hit
CTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGATGGAGG30.12679628064243448No Hit
GAGTTGGAGTTCTATCTTAGGAAAATCAAGGCCCGCAAAGGCAAATAAAT30.12679628064243448No Hit
GTACATGGGAGACCGGTCGGCCTGGGCAACCTGCGCTGAAGATGCCGGGA30.12679628064243448No Hit
ATCTTACTGTGCCGAGATCGCTCACAATGTTTCCTCCAAGAACCGCAAAG30.12679628064243448No Hit
GCTACTCAGGAGGCTGAGACACGAGAATTGCTTGAACCCGGGAGGCAGAG30.12679628064243448No Hit
GGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACG30.12679628064243448No Hit
CACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGG30.12679628064243448No Hit
GGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGA30.12679628064243448No Hit
GGTGAAAGAGAAGGAGTCAGAATCACAAGGCAATGATGATCCCTGGTGCC30.12679628064243448No Hit
TGTAATCTCAGCTTAGAAGAAATCTGTGTGGGTTGGGTTAATTTTGGATC30.12679628064243448No Hit
TCCCACCTCTGTATCAATTTCACATTCAACAGGTGGTAAGCGCAGCTCAC30.12679628064243448No Hit
GATGAAGAGACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATAAAGA30.12679628064243448No Hit
CCACAACCTTGCACAAAGGCCACAAAACTACACAAAAAAATGCTTCAAGG30.12679628064243448No Hit
CCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAA30.12679628064243448No Hit
TCATAGAAAAGTACTACACGCGCCTGGGCAACGACTTCCACACGAACAAG30.12679628064243448No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG30.12679628064243448No Hit
GGAGATGGGAACTCCAGATGTGCGCATTGACACCAGGCTCAACAAAGCTG30.12679628064243448No Hit
GATTATAAATGCTTAAAAAAGAAAACCAGGCCAGGCGTGGTGGCTCATGC30.12679628064243448No Hit
CTACAAACCTCACCATCTGTGCTCTTCAGAGACCTTGACTTTCAGAAACA30.12679628064243448No Hit
CTCGAAAAAGCCGTACAAAAAATAAGCAAAAGCGTCCCAGGAGCCATACT30.12679628064243448No Hit
CCTGGGGCCCAGTCGGCCCTCAGAGCCCTTGCCCGCTCGGGTATGAAGAT30.12679628064243448No Hit
CAACAAAATAAGACCCCATCTCTATAAAAAAAATTAGCCAGATGTGGTGG30.12679628064243448No Hit
CCCCTAAGGGCTGTGGCACTGTCCTGCTCTCCGGTCCTCGCAAGGGCCGA30.12679628064243448No Hit
CCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGT30.12679628064243448No Hit
CCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCA30.12679628064243448No Hit
CCTCCAGGTGCTACCCAGGAGTCCCCTCCATGTACACACACACAACTCAG30.12679628064243448No Hit
GGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCT30.12679628064243448No Hit
CCCAAGGGCTGGGCGTGGTGGCTCATGCCTGGAATCCTAGCACTTTGGGA30.12679628064243448No Hit
AGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAG30.12679628064243448No Hit
CTGCCAAGCGAGCGTGGTGTGGTGCCCCCGACCTACAACTTGCGCCAATT30.12679628064243448No Hit
AGATGATACAATATACGAGGATGAAGATGTAAAAGAAGCCATAAGAAGAC30.12679628064243448No Hit
AGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGG30.12679628064243448No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGC30.12679628064243448No Hit
CTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAAGACCTACAG30.12679628064243448No Hit
GTCAGGAAGAGAGCTAGTAGTTAAACTGAAACAAAGGTCCGACAGTCTTT30.12679628064243448No Hit
ACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCC30.12679628064243448No Hit
GGCCAAGATAGGAAGATCACTTGAGGCCAGAGCTCCAGAACAGCCTAAGC30.12679628064243448No Hit
GGTGCACACTTGTAATCCTAGCTACTCCGGAGGCTGAGGCAGGAGAATCG30.12679628064243448No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC30.12679628064243448No Hit
GAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGA30.12679628064243448No Hit
AGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCC30.12679628064243448No Hit
AAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCG30.12679628064243448No Hit
CCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTG30.12679628064243448No Hit
CTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCTGCTGCTG30.12679628064243448No Hit
CGTGAGAAAACTGCGAGCCAGCATTACCCCCGGGACCATTCTGATCATCC30.12679628064243448No Hit
CCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATTGATT30.12679628064243448No Hit
GGGCGTGGTGGTGCACGTCTGTAGCTACTCAGGAAGCTGAGGCAAGAGAA30.12679628064243448No Hit
AATCAAAATTGTCTCTTCTGAGGACCGCTGATAAGCATTGACTTGCTGTC30.12679628064243448No Hit
AAGAAATAGTGTTTTTTGTTTTTGCTTTGTTATGGAAAGTGCAGGGAAAT30.12679628064243448No Hit
GTCCTGCTCTCCGGTCCTCGCAAGGGCCGAGAGGTGTACCGGCATTTCGG30.12679628064243448No Hit
GCCGAGGTAATTGCATTGCCTGTGGAACAGGGGAACTTTCCGTACCTGCA30.12679628064243448No Hit
GCATAAATGTCTTCTTTTGAGAAGTGTCTCTTCATATCCAGGAGCAAAAA30.12679628064243448No Hit
GTGAAACTGGAAACTTTATGACATTGTAAATTATCAGCTGGTTTTTCTGA30.12679628064243448No Hit
GAGGAAAAAATAAAAGATCTAAAAGAAGAGAGAGAAAACATACCCACAGA30.12679628064243448No Hit
GGCAGGGGAGGCGGCACTGTTCCCGGGAGACCGTCATCAAGCAGACGATG30.12679628064243448No Hit
GTTACTCCACGTGTCCTGCAGCACAAACGGCGGCGTATTGCTCTGAAGAA30.12679628064243448No Hit
AGGATATAGAGTTTGTACCAAATATGAATGAATATTGTTCAAAGCAAGGA30.12679628064243448No Hit
ATATTGTACAGTTTTGCATGGCCTGGTGTGATCATTTTTTGGTTAGAATA30.12679628064243448No Hit
CGCCTGGGCAACGACTTCCACACGAACAAGCGCGTGTGCGAGGAGATCGC30.12679628064243448No Hit
GCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCC30.12679628064243448No Hit
GGGATTGGGTGTGGTTGCCAAAGAAATAAAAGCATTGAAATTTCAATAGA30.12679628064243448No Hit
TATCAACGCAGAGTACATGGGGCCTTTCCGCTCGGCTGTTTTCCTGCGCA30.12679628064243448No Hit
GAAGAACCAAGCTGGGTCTATAAGGAATTGCACATGAGATGGCACACATA30.12679628064243448No Hit
GGTCGAGGCGGGTGGATCTCTAGAGCTCAGAAGTTCGAGACCAGCCTGGC30.12679628064243448No Hit
GAGCATCTACTGGGCTGTCCTTAACAGCTTCTGAAAATTCAGATGGAGAG30.12679628064243448No Hit
GGTCAGGAGATGGAGACCATCCCGGCTAACACAGTGAAACCCCATCTCTC30.12679628064243448No Hit
AAAACATGGTGGCCAAAGTGGATGAGGTGAAGTCCACAATCAAGTTCCAA30.12679628064243448No Hit
TCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAA30.12679628064243448No Hit

[OK]Adapter Content

Adapter graph