FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008171363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008171363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4727
Total Bases804.6 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC70.14808546646921938No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG70.14808546646921938No Hit
AGATAGTACCATCTAGCTCTTAGATTTATTGTGATGAGATGGTCTTTATA70.14808546646921938No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA60.12693039983075946No Hit
GTGCATGCATGTGCACATGTGTGTGTAATTGAGATAGTACCATCTAGCTC60.12693039983075946No Hit
GTTAGAGACCAGCCTGGCCAACATGGTGAAACTCCGTCTCTACTAAAAAT60.12693039983075946No Hit
GTACCATCTAGCTCTTAGATTTATTGTGATGAGATGGTCTTTATATGTAA50.10577533319229956No Hit
CAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGT50.10577533319229956No Hit
ATCTAGCTCTTAGATTTATTGTGATGAGATGGTCTTTATATGTAAAACAA50.10577533319229956No Hit
GTGCATGTATGTGTGCATGCATGTGCACATGTGTGTGTAATTGAGATAGT50.10577533319229956No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA50.10577533319229956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)