FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008177094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008177094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506838256
Total Bases51.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCATCTCGTATGC16479960.3251522513328197TruSeq Adapter, Index 16 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCATCGCGTATGC11484890.22659871988826352TruSeq Adapter, Index 16 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)