FastQCFastQC Report
Wed 8 May 2024
EGAF00008177744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008177744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38858284
Total Bases621.7 Mbp
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCATCTGACACCC768590.19779308834121442No Hit
CCAACACCTCAATAGA700630.18030389607528732No Hit
ACTTATCTGAGAGGCT664670.17104975608289857No Hit
ATTGAGAGAGCTCTTC651220.16758846067417696No Hit
AGGCCAAGACGAACGA558830.14381232068817038No Hit
CCCGAGTGATTCCATT504220.12975868929261003No Hit
CTAAGTCGACATCTTT491560.1265006967368914No Hit
GATATCGTGGTTTACG467040.12019058793229263No Hit
TCGACACCTAGACAAT447120.115064267892015No Hit
GGTAGTTTGAGGTCCC419450.10794352112923977No Hit
CCATGATGATGAACAA412950.10627077613617729No Hit
AGAGACCGACTTTAGG407460.10485794998049837No Hit
AAATAGGACCTCCTAC396470.10202972421530503No Hit
CGAGTTAACAATGCGG395210.10170546903203447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)