FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008178573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008178573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49775988
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length20-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1021920.20530381034325226No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC774070.15551072537224173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)