FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008178840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008178840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15745477
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATGTACTCTGCGTTGATACCACT322980.20512557352184374Clontech SMART CDS Primer II A (95% over 22bp)
TCCCATGTACTCTGCGTTGATACCAC223230.14177404723908968Clontech SMART CDS Primer II A (95% over 21bp)
CCCCATGTACTCTGCGTTGATACCAC184150.11695422120269841Clontech SMART CDS Primer II A (95% over 21bp)
CATCCCATGTACTCTGCGTTGATACC160570.10197849198217367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)