FastQCFastQC Report
Wed 6 Sep 2023
EGAF00008202244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008202244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131591576
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGT3652660.2775755189678707No Hit
CCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTA2269160.1724396096601199No Hit
CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATT2246560.17072217449542515No Hit
CTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGC2075900.1577532592207878No Hit
GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTT1675300.12731058103597756No Hit
GCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTG1406970.10691945812701567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)