FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008204244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34839391
Sequences flagged as poor quality0
Sequence length91
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG1659865247.64334715265258No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG1493600942.871039278499445No Hit
CATTGAACATGGTCTTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAG1109880.31857043654982375No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC1070400.30723843594166156No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTGC950800.27290947766566875No Hit
NATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG705760.20257529759920315No Hit
NATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG635520.18241421039765018No Hit
CATTGAACATGGTCTTGTGGATGAGCTGTACAGAGAAGCACCTATTGACA629870.1807924828536756No Hit
CATTGAACATGGTCTTGTGGATGAGCTGTACAGAGAAGCACCTATTGATA554760.15923355261864364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG451390.12956311434950168No Hit
CTTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC446860.1282628620000849No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGTAAGTTCGGACCATCAGTG412340.11835453725353581No Hit
CTTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTGC405350.11634818760178672No Hit
TGTGCAAAAGCAAGAAGTCCTGGCAAGCGAGACACACTGGTATTAAGATT388990.11165235350985327No Hit
CATGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC383430.11005645879401278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)