FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008204249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43307292
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCCAATTTTTTTCATTTCCTCATC639240.1476056272463307No Hit
TGCAGTACAATTTTTTTCATTTCCTCAT614070.1417936729916061No Hit
CACACAATTTTTTTCATTTCCTCATCAG596100.137644256306767No Hit
CACTAAGGTGACACGACTAATATCCATC462360.1067626209461446No Hit
ACCTACCTCATTATCCTATAAGCCGCTA448890.10365229024248389No Hit
GGTCACGAGTGATAGTTTGGATAAGCCC447840.10340983684687557No Hit
AGGCATTGTAGTCGGATTTAAGTCTCGC446980.10321125597047259No Hit
AGTAGTCAGCCGTTATCGTTATGCACAG444790.10270556745963244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)